miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica oleracea var. alboglabra



ABOUT THIS RECORD

ID: MNEST000325
species: Brassica oleracea var. alboglabra
miRNA family: MIRf129
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCGGAGGGATGCCTTCCTTG

miRNA*
AGGGTGGACTCCTTCTGAATG

mismatches: 5
bulges: 0

View larger
pre-miRNA
ACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGC
TGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA


dot-bracket secondary structure
.((....)).(((((((((..(((((.((..((((((((.((...((.((((....))))(((....((.((..((((.....))))...)).))..)))
.))..)).))))))))..)).)))))..))))).))))........



SIMILARITIES
miRBase no hits

PMRD ath-miRf10060-akr: 0.0000000000001

microPC no hits
UniProt sp|P0CH32|UBQ4_ARATH: 2e-20

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;